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t(s("/param")) m(s("set")) s("Faraday_constant") s("96485.32289")
t(s("/param")) m(s("set")) s("Faraday_constant") s("96485.32289 [C/mol]")
t(s("/param")) m(s("set")) s("photon_flux") s("0.0464 [A/cm^2]")
t(s("/component/comp1/physics/re/feature/rch1")) m(s("set")) s("r") s("(re.kf_1)-re.kr_1*re.c_PAH_")
t(s("/component/comp1/physics/re/feature/rch1")) m(s("set")) s("r") s("(re.kf_1 [mol/(m^3)])-re.kr_1*re.c_PAH_")
t(s("/component/comp1/physics/re/feature/rch1")) m(s("set")) s("kf") s("photon_flux/(Faraday_constant * length)*PA_fraction*Absorptance [m^3/mol]")
t(s("/component/comp1/physics/re/feature/rch2")) m(s("set")) s("kf") s("photon_flux/(Faraday_constant * length)*PAH_fraction*Absorptance [m^3/mol]")
t(s("/component/comp1/physics/re/feature/rch2")) m(s("set")) s("kf") s("photon_flux/(Faraday_constant * length)*PA_fraction*Absorptance [m^3/mol]")
t(s("/param")) m(s("set")) s("k3") s("1 [1/(s*mol)]")
t(s("/component/comp1/physics/re/feature/rch3")) m(s("set")) s("kf") s("k3 [mol/(m^3)]")
t(s("/component/comp1/physics/re/feature/rch3")) m(s("set")) s("kf") s("k3 [(m^3)/mol]")
t(s("/component/comp1/physics/re/feature/rch3")) m(s("set")) s("kf") s("k3 [m^3/mol]")
t(s("/component/comp1/physics/re/feature/rch3")) m(s("set")) s("kf") s("k3 [mol/(m^3)]")
t(s("/component/comp1/physics/re/feature/rch3")) m(s("set")) s("kf") s("k3")
t(s("/param")) m(s("set")) s("k3") s("1 [1/s]")
t(s("/param")) m(s("set")) s("k5") s("1 [1/s]")
t(s("/component/comp1/physics/re/feature/rch3")) m(s("set")) s("kf") s("k3 [mol/(m^3)]")
t(s("/component/comp1/physics/re/feature/rch3")) m(s("set")) s("kf") s("k3 [(m^3)/mol]")
t(s("/param")) m(s("set")) s("k3") s("1 [m^3/(s*mol)]")
t(s("/param")) m(s("descr")) s("k3") s("10^10")
t(s("/param")) m(s("descr")) s("k4") s("10^10")
t(s("/param")) m(s("set")) s("k5") s("1 [m^3/(s*mol)]")
t(s("/param")) m(s("descr")) s("k5") s("10^10")
t(s("/param")) m(s("descr")) s("k6") s("10^10")
t(s("/param")) m(s("descr")) s("k7") s("10^11")
t(s("/component/comp1/physics/re/feature/rch3")) m(s("set")) s("kf") s("k3")
t(s("/component/comp1/physics/re/feature/rch5")) m(s("set")) s("r") s("re.kf_5*re.c_PA*re.c_H3O-(re.kr_5*re.c_PAH [mol/m^3])")
t(s("/component/comp1/physics/re/feature/rch5")) m(s("set")) s("formula") s("PA+H3O<=>PAH+H2O")
t(s("/component/comp1/physics/re/feature/rch5")) m(s("set")) s("r") s("re.kf_5*re.c_PA*re.c_H3O-re.kr_5*re.c_PAH")
t(s("/component/comp1/physics/re/feature/rch5")) m(s("set")) s("r") s("re.kf_5*re.c_PA*re.c_H3O-(re.kr_5*re.c_PAH[mol/m^3])")
t(s("/component/comp1/expr/var1")) m(s("set")) s("k8") s("min(10^10, 10^10*KeqPAH_PA) [m^3/(s*mol)]")
t(s("/component/comp1/expr/var1")) m(s("set")) s("k8") s("min(10^10, 10^10*Keq_PAH_PA) [m^3/(s*mol)]")
t(s("/param")) m(s("set")) s("tauPAH_") s("1 [s]")
t(s("/param")) m(s("set")) s("tauPA_") s("1 [s]")
t(s("/param" )) m(s("set")) s("Keq_PA_H3O") s("1/(10^-pKa_)")
t(s("/param")) m(s("set")) s("pKa") s("14")
t(s("/param")) m(s("set")) s("pKa_") s("0")
t(s("/param")) m(s("set")) s("pHo") s("7")
t(s("/param")) m(s("set")) s("Kw") s("10^-14")
t(s("/component/comp1/expr/var1")) m(s("descr")) s("k8") s("")
t(s("/param")) m(s("set")) s("length") s("10 [nm]")
t(s("/param")) m(s("set")) s("Absorptance") s("1-10^-1")
t(s("/study")) m(s("create")) s("std1")
t(s("/study/std1")) m(s("create")) s("time") s("Transient")
t(s("/study/std1/feature/time")) m(s("activate")) s("re") b(true)
t(s("/component/comp1/func")) m(s("create")) s("an1") s("Analytic")
t(s("/component/comp1/func/an1")) m(s("set")) s("expr") s("t")
t(s("/component/comp1/func/an1")) m(s("set")) s("args") s("t")
t(s("/component/comp1/func/an1")) m(s("set")) s("expr") s("(x < dark_t) || (x > (dark_t + light_t))")
t(s("/component/comp1/func/an1")) m(s("set")) s("args") s("x")
t(s("/component/comp1/func/an1")) m(s("set")) s("argunit") s("s")
t(s("/component/comp1/func/an1")) m(s("set")) s("fununit") s("1")
t(s("/component/comp1/func/an1")) m(s("set")) s("funcname") s("Light_Pulse")
t(s("/param")) m(s("set")) s("dark_t") s("1 [s]")
t(s("/param")) m(s("set")) s("light_t") s("1 [s]")
t(s("/study/std1/feature/time")) m(s("set")) s("tlist") s("range(0, 0.01, ((2*dark_t)+light_t))")
t(s("/param")) m(s("set")) s("Temperature") s("298.15 [K]")
t(s("/param")) m(s("set")) s("Volume") s("length [cm^2]")
t(s("/component/comp1/physics/re/prop/energybalance")) m(s("set")) s("T") s("Temperature")
t(s("/component/comp1/physics/re/prop/massbalance")) m(s("set")) s("Vr") s("Volume")
t(s("/")) m(s("label")) s("correct_parameters.mph")
t(s("/component/comp1/physics")) m(s("create")) s("sens") s("Sensitivity")
t(s("/study/std1/feature/time")) m(s("activate")) s("sens") b(true)
t(s("/component/comp1/physics")) m(s("create")) s("ev") s("Events")
t(s("/study/std1/feature/time")) m(s("activate")) s("ev") b(true)
t(s("/component/comp1/physics")) m(s("create")) s("ev2") s("Events")
t(s("/study/std1/feature/time")) m(s("activate")) s("ev2") b(true)
t(s("/component/comp1/physics/ev")) m(s("create")) s("expl1") s("ExplicitEvent") i(-1)
t(s("/component/comp1/physics")) m(s("remove")) s("ev2")
t(s("/component/comp1/physics/ev")) m(s("create")) s("expl2") s("ExplicitEvent") i(-1)
t(s("/component/comp1/physics/ev/feature/expl1")) m(s("set")) s("start") s("dark_t")
t(s("/component/comp1/physics/ev/feature/expl2")) m(s("set")) s("start") s("dark_t + light_t")
t(s("/component/comp1/func/an1")) m(s("setIndex")) s("plotargs") i(3) i(0) i(2)
t(s("/")) m(s("label")) s("correct_parameters.mph")
t(s("/param")) m(s("set")) s("Keq_PAH_OH") s("10^(-pKa_)/Kw")
t(s("/param")) m(s("set")) s("Keq_PAH3O") s("1/(10^-pKa)")
t(s("/param")) m(s("set")) s("Keq_PAHOH") s("10^(-pKa)/Kw")
t(s("/param")) m(s("set")) s("Keq_H3OOH") s("10^11")
t(s("/param")) m(s("set")) s("Keq_PAH_PA") s("10^(-pKa_)/10^(pKa)")
t(s("/param")) m(s("set")) s("Keq_PAH_PA") s("10^(-pKa_)/10^(-pKa)")
t(s("/param")) m(s("set")) s("k3") s("10^10 [m^3/(s*mol)]")
t(s("/param")) m(s("set")) s("k4") s("10^10 [m^3/(s*mol)]")
t(s("/param")) m(s("set")) s("k5") s("10^10 [m^3/(s*mol)]")
t(s("/param")) m(s("set")) s("k6") s("10^10 [m^3/(s*mol)]")
t(s("/param")) m(s("set")) s("k7") s("10^10 [m^3/(s*mol)]")
t(s("/param")) m(s("set")) s("k7") s("10^11[m^3/(s*mol)]")
t(s("/param")) m(s("set")) s("k7") s("10^11 [m^3/(s*mol)]")
t(s("/param")) m(s("set")) s("k3") s("10^10 [1/(M*s)]")
t(s("/param")) m(s("set")) s("k4") s("10^10 [1/(M*s)]")
t(s("/param")) m(s("set")) s("k5") s("10^10 [1/(M*s)]")
t(s("/param")) m(s("set")) s("k6") s("10^10 [1/(M*s)]")
t(s("/param")) m(s("set")) s("k7") s("10^11 [1/(M*s)]")
t(s("/")) m(s("label")) s("correct_parameters.mph")
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("10^-pH") i(0) i(0)
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("10^-pHo") i(0) i(0)
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("10^-pHo") i(1) i(0)
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") i(0) i(0) i(0)
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("Kw/((10^-pHo) [M]") i(2) i(0)
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("Kw/((10^-pHo) [M])") i(2) i(0)
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("Kw/(10^-pHo) [M]") i(2) i(0)
t(s("/param")) m(s("set")) s("Kw") s("10^-14 [M^2]")
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("55.5 [M]") i(0) i(0)
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("10^-pHo [M]") i(1) i(0)
t(s("/param")) m(s("set")) s("TC_photoacid") s("1 [M]")
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("TC_photoacid/(1+10^(pH-pKa))") i(3) i(0)
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("TC_photoacid/(1+10^(pHo-pKa))") i(3) i(0)
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("TC_photoacid/(1+10^(pHo-pKa)) [M]") i(3) i(0)
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("TC_photoacid/(1+10^(pHo-pKa))") i(3) i(0)
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("TC_photoacid/(1+10^(pHo-pKa)) [M]") i(3) i(0)
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("TC_photoacid/(1+10^(pHo-pKa))") i(3) i(0)
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("TC_photoacid/(1+10^(pHo-pKa))") i(4) i(0)
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("10^(pH0-pKa)*TC_photoacid/(1+10^(pHo-pKa))") i(3) i(0)
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("10^(pHo-pKa)*TC_photoacid/(1+10^(pHo-pKa))") i(3) i(0)
t(s("/")) m(s("label")) s("correct_parameters.mph")
t(s("/component/comp1/physics/re/feature/rch1")) m(s("set")) s("kf") s("photon_flux/(Faraday_constant * length)*PA_fraction*Absorptance * Light_Pulse [m^3/mol]")
t(s("/component/comp1/physics/re/feature/rch1")) m(s("set")) s("kf") s("photon_flux/(Faraday_constant * length)*PA_fraction*Absorptance * Light_Pulse(t) [m^3/mol]")
t(s("/component/comp1/physics/re/feature/rch2")) m(s("set")) s("kf") s("photon_flux/(Faraday_constant * length)*PA_fraction*Absorptance*Light_Pulse(t) [m^3/mol]")
t(s("/component/comp1/func/an1")) m(s("set")) s("expr") s("(x > dark_t) && (x < (dark_t + light_t))")
t(s("/component/comp1/physics/re/feature/rch1")) m(s("set")) s("kf") s("photon_flux/(Faraday_constant * length)*PA_fraction*Absorptance * Light_Pulse(t) [1/M]")
t(s("/component/comp1/physics/re/feature/rch1")) m(s("set")) s("r") s("(re.kf_1 [M)])-re.kr_1*re.c_PAH_")
t(s("/component/comp1/physics/re/feature/rch1")) m(s("set")) s("r") s("(re.kf_1 [M])-re.kr_1*re.c_PAH_")
t(s("/component/comp1/physics/re/feature/rch2")) m(s("set")) s("r") s("(re.kf_2 [M])-re.kr_2*re.c_PA_")
t(s("/component/comp1/physics/re/feature/rch2")) m(s("set")) s("kf") s("photon_flux/(Faraday_constant * length)*PA_fraction*Absorptance*Light_Pulse(t) [1/M]")
t(s("/sol")) m(s("create")) s("sol1")
t(s("/sol/sol1")) m(s("study")) s("std1")
t(s("/study/std1/feature/time")) m(s("set")) s("notlistsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("notsolnum") s("1")
t(s("/study/std1/feature/time")) m(s("set")) s("listsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("solnum") s("1")
t(s("/sol/sol1")) m(s("create")) s("st1") s("StudyStep")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("study") s("std1")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("studystep") s("time")
t(s("/sol/sol1")) m(s("create")) s("v1") s("Variables")
t(s("/sol/sol1/feature/v1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1")) m(s("create")) s("t1") s("Time")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tlist") s("range(0, 0.01, ((2*dark_t)+light_t))")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plot") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotgroup") s("pg1")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotfreq") s("tout")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probesel") s("all")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probes") sa()
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probefreq") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tout") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("rtol") d(1.0E-5)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobal") d(1.0E-6)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalfactor") d(0.1)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalvaluemethod") s("manual")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("consistent") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1/feature/t1")) m(s("create")) s("fc1") s("FullyCoupled")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("linsolver") s("dDef")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature")) m(s("remove")) s("fcDef")
t(s("/sol/sol1")) m(s("attach")) s("std1")
t(s("/result/feature")) m(s("create")) s("pg2") s("PlotGroup1D")
t(s("/result/feature/pg2")) m(s("set")) s("data") s("dset1")
t(s("/result/feature/pg2")) m(s("create")) s("glob1") s("Global")
t(s("/result/feature/pg2/feature/glob1")) m(s("set")) s("expr") sa(s("comp1.re.c_PAH"),s("comp1.re.c_PAH_"),s("comp1.re.c_PA"),s("comp1.re.c_PA_"),s("comp1.re.c_H2O"),s("comp1.re.c_OH"),s("comp1.re.c_H3O"))
t(s("/result/feature/pg2/feature/glob1")) m(s("set")) s("descr") sa(s("Concentration"),s("Concentration"),s("Concentration"),s("Concentration"),s("Concentration"),s("Concentration"),s("Concentration"))
t(s("/result/feature/pg2/feature/glob1")) m(s("set")) s("unit") sa(s(""),s(""),s(""),s(""),s(""),s(""),s(""))
t(s("/result/feature/pg2/feature/glob1")) m(s("set")) s("expr") sa(s("comp1.re.c_PAH"),s("comp1.re.c_PAH_"),s("comp1.re.c_PA"),s("comp1.re.c_PA_"),s("comp1.re.c_H2O"),s("comp1.re.c_OH"),s("comp1.re.c_H3O"))
t(s("/result/feature/pg2/feature/glob1")) m(s("set")) s("descr") sa(s("Concentration"),s("Concentration"),s("Concentration"),s("Concentration"),s("Concentration"),s("Concentration"),s("Concentration"))
t(s("/result/feature/pg2")) m(s("label")) s("Concentration (re)")
t(s("/sol/sol1")) m(s("runAll"))
t(s("/result/feature/pg2")) m(s("run"))
t(s("/result/feature/pg2")) m(s("run"))
t(s("/result/feature/pg2/feature/glob1")) m(s("remove")) s("unit") i(0)
t(s("/result/feature/pg2/feature/glob1")) m(s("remove")) s("descr") i(0)
t(s("/result/feature/pg2/feature/glob1")) m(s("remove")) s("expr") i(0)
t(s("/result/feature/pg2/feature/glob1")) m(s("remove")) s("unit") i(0)
t(s("/result/feature/pg2/feature/glob1")) m(s("remove")) s("descr") i(0)
t(s("/result/feature/pg2/feature/glob1")) m(s("remove")) s("expr") i(0)
t(s("/result/feature/pg2/feature/glob1")) m(s("remove")) s("unit") i(0)
t(s("/result/feature/pg2/feature/glob1")) m(s("remove")) s("descr") i(0)
t(s("/result/feature/pg2/feature/glob1")) m(s("remove")) s("expr") i(0)
t(s("/result/feature/pg2/feature/glob1")) m(s("remove")) s("unit") i(0)
t(s("/result/feature/pg2/feature/glob1")) m(s("remove")) s("descr") i(0)
t(s("/result/feature/pg2/feature/glob1")) m(s("remove")) s("expr") i(0)
t(s("/result/feature/pg2/feature/glob1")) m(s("remove")) s("unit") i(0)
t(s("/result/feature/pg2/feature/glob1")) m(s("remove")) s("descr") i(0)
t(s("/result/feature/pg2/feature/glob1")) m(s("remove")) s("expr") i(0)
t(s("/result/feature/pg2")) m(s("run"))
t(s("/param")) m(s("set")) s("Keq_PA_H3O") s("1/(10^-pKa_) [1/M]")
t(s("/param")) m(s("set")) s("Keq_PAH_OH") s("10^(-pKa_)/Kw [1/M]")
t(s("/param")) m(s("set")) s("Keq_PAH3O") s("1/(10^-pKa) [1/M]")
t(s("/param")) m(s("set")) s("Keq_PAHOH") s("10^(-pKa)/Kw [1/M]")
t(s("/param")) m(s("set")) s("Keq_H3OOH") s("1/Kw")
t(s("/")) m(s("label")) s("correct_parameters.mph")
t(s("/sol/sol1")) m(s("study")) s("std1")
t(s("/study/std1/feature/time")) m(s("set")) s("notlistsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("notsolnum") s("1")
t(s("/study/std1/feature/time")) m(s("set")) s("listsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("solnum") s("1")
t(s("/sol/sol1/feature")) m(s("remove")) s("t1")
t(s("/sol/sol1/feature")) m(s("remove")) s("v1")
t(s("/sol/sol1/feature")) m(s("remove")) s("st1")
t(s("/sol/sol1")) m(s("create")) s("st1") s("StudyStep")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("study") s("std1")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("studystep") s("time")
t(s("/sol/sol1")) m(s("create")) s("v1") s("Variables")
t(s("/sol/sol1/feature/v1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1")) m(s("create")) s("t1") s("Time")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tlist") s("range(0, 0.01, ((2*dark_t)+light_t))")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plot") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotgroup") s("pg1")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotfreq") s("tout")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probesel") s("all")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probes") sa()
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probefreq") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tout") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("rtol") d(1.0E-5)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobal") d(1.0E-6)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalfactor") d(0.1)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalvaluemethod") s("manual")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("consistent") s("off")
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t(s("/sol/sol1/feature/t1")) m(s("create")) s("fc1") s("FullyCoupled")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("linsolver") s("dDef")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature")) m(s("remove")) s("fcDef")
t(s("/sol/sol1")) m(s("attach")) s("std1")
t(s("/sol/sol1")) m(s("runAll"))
t(s("/result/feature/pg2")) m(s("run"))
t(s("/param")) m(s("set")) s("Kw") s("10^-14")
t(s("/param")) m(s("set")) s("Keq_PA_H3O") s("1/(10^-pKa_)")
t(s("/param")) m(s("set")) s("Keq_PAH_OH") s("10^(-pKa_)/Kw")
t(s("/param")) m(s("set")) s("Keq_PAH3O") s("1/(10^-pKa)")
t(s("/param")) m(s("set")) s("Keq_PAHOH") s("10^(-pKa)/Kw")
t(s("/sol/sol1")) m(s("study")) s("std1")
t(s("/study/std1/feature/time")) m(s("set")) s("notlistsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("notsolnum") s("1")
t(s("/study/std1/feature/time")) m(s("set")) s("listsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("solnum") s("1")
t(s("/sol/sol1/feature")) m(s("remove")) s("t1")
t(s("/sol/sol1/feature")) m(s("remove")) s("v1")
t(s("/sol/sol1/feature")) m(s("remove")) s("st1")
t(s("/sol/sol1")) m(s("create")) s("st1") s("StudyStep")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("study") s("std1")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("studystep") s("time")
t(s("/sol/sol1")) m(s("create")) s("v1") s("Variables")
t(s("/sol/sol1/feature/v1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1")) m(s("create")) s("t1") s("Time")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tlist") s("range(0, 0.01, ((2*dark_t)+light_t))")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plot") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotgroup") s("pg1")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotfreq") s("tout")
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t(s("/sol/sol1/feature/t1")) m(s("set")) s("probes") sa()
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probefreq") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tout") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("rtol") d(1.0E-5)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobal") d(1.0E-6)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalfactor") d(0.1)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalvaluemethod") s("manual")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("consistent") s("off")
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t(s("/sol/sol1/feature/t1")) m(s("create")) s("fc1") s("FullyCoupled")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("linsolver") s("dDef")
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t(s("/sol/sol1")) m(s("attach")) s("std1")
t(s("/sol/sol1")) m(s("runAll"))
t(s("/result/feature/pg2")) m(s("run"))
t(s("/param")) m(s("set")) s("tauPAH_") s("1 [ns]")
t(s("/param")) m(s("set")) s("tauPA_") s("1 [ns]")
t(s("/sol/sol1")) m(s("study")) s("std1")
t(s("/study/std1/feature/time")) m(s("set")) s("notlistsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("notsolnum") s("1")
t(s("/study/std1/feature/time")) m(s("set")) s("listsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("solnum") s("1")
t(s("/sol/sol1/feature")) m(s("remove")) s("t1")
t(s("/sol/sol1/feature")) m(s("remove")) s("v1")
t(s("/sol/sol1/feature")) m(s("remove")) s("st1")
t(s("/sol/sol1")) m(s("create")) s("st1") s("StudyStep")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("study") s("std1")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("studystep") s("time")
t(s("/sol/sol1")) m(s("create")) s("v1") s("Variables")
t(s("/sol/sol1/feature/v1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1")) m(s("create")) s("t1") s("Time")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tlist") s("range(0, 0.01, ((2*dark_t)+light_t))")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plot") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotgroup") s("pg1")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotfreq") s("tout")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probesel") s("all")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probes") sa()
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probefreq") s("tsteps")
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t(s("/sol/sol1/feature/t1")) m(s("set")) s("rtol") d(1.0E-5)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobal") d(1.0E-6)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalfactor") d(0.1)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalvaluemethod") s("manual")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("consistent") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1/feature/t1")) m(s("create")) s("fc1") s("FullyCoupled")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("linsolver") s("dDef")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature")) m(s("remove")) s("fcDef")
t(s("/sol/sol1")) m(s("attach")) s("std1")
t(s("/sol/sol1")) m(s("runAll"))
t(s("/result/feature/pg2")) m(s("run"))
t(s("/component/comp1/physics/re/feature/rch3")) m(s("set")) s("r") s("re.kf_3*re.c_PA_*re.c_H3O-(re.kr_3*re.c_PAH_ [M])")
t(s("/component/comp1/physics/re/feature/rch4")) m(s("set")) s("r") s("re.kf_4*re.c_PAH_*re.c_OH-(re.kr_4*re.c_PA_ [M])")
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") d(55.5) i(0) i(0)
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("10^-pHo") i(1) i(0)
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("Kw/(10^-pHo)") i(2) i(0)
t(s("/component/comp1/physics/re/feature/rch5")) m(s("set")) s("r") s("re.kf_5*re.c_PA*re.c_H3O-(re.kr_5*re.c_PAH[M])")
t(s("/component/comp1/physics/re/feature/rch6")) m(s("set")) s("r") s("re.kf_6*re.c_PAH*re.c_OH-(re.kr_6*re.c_PA [M])")
t(s("/component/comp1/physics/re/feature/rch7")) m(s("set")) s("r") s("re.kf_7*re.c_H3O*re.c_OH-(re.kr_7 [M^2])")
t(s("/sol/sol1")) m(s("study")) s("std1")
t(s("/study/std1/feature/time")) m(s("set")) s("notlistsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("notsolnum") s("1")
t(s("/study/std1/feature/time")) m(s("set")) s("listsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("solnum") s("1")
t(s("/sol/sol1/feature")) m(s("remove")) s("t1")
t(s("/sol/sol1/feature")) m(s("remove")) s("v1")
t(s("/sol/sol1/feature")) m(s("remove")) s("st1")
t(s("/sol/sol1")) m(s("create")) s("st1") s("StudyStep")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("study") s("std1")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("studystep") s("time")
t(s("/sol/sol1")) m(s("create")) s("v1") s("Variables")
t(s("/sol/sol1/feature/v1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1")) m(s("create")) s("t1") s("Time")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tlist") s("range(0, 0.01, ((2*dark_t)+light_t))")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plot") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotgroup") s("pg1")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotfreq") s("tout")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probesel") s("all")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probes") sa()
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probefreq") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tout") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("rtol") d(1.0E-5)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobal") d(1.0E-6)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalfactor") d(0.1)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalvaluemethod") s("manual")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("consistent") s("off")
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t(s("/sol/sol1/feature/t1")) m(s("create")) s("fc1") s("FullyCoupled")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
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t(s("/sol/sol1/feature/t1/feature")) m(s("remove")) s("fcDef")
t(s("/sol/so l1")) m(s("attach")) s("std1")
t(s("/sol/sol1")) m(s("runAll"))
t(s("/result/feature/pg2")) m(s("run"))
t(s("/study/std1/feature/time")) m(s("set")) s("usertol") b(true)
t(s("/sol/sol1")) m(s("study")) s("std1")
t(s("/study/std1/feature/time")) m(s("set")) s("notlistsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("notsolnum") s("1")
t(s("/study/std1/feature/time")) m(s("set")) s("listsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("solnum") s("1")
t(s("/sol/sol1/feature")) m(s("remove")) s("t1")
t(s("/sol/sol1/feature")) m(s("remove")) s("v1")
t(s("/sol/sol1/feature")) m(s("remove")) s("st1")
t(s("/sol/sol1")) m(s("create")) s("st1") s("StudyStep")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("study") s("std1")
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t(s("/sol/sol1")) m(s("create")) s("v1") s("Variables")
t(s("/sol/sol1/feature/v1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1")) m(s("create")) s("t1") s("Time")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tlist") s("range(0, 0.01, ((2*dark_t)+light_t))")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plot") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotgroup") s("pg1")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotfreq") s("tout")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probesel") s("all")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probes") sa()
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probefreq") s("tsteps")
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t(s("/sol/sol1/feature/t1")) m(s("set")) s("rtol") d(1.0E-5)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobal") d(1.0E-6)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalfactor") d(0.1)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalvaluemethod") s("manual")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("consistent") s("off")
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t(s("/sol/sol1/feature/t1")) m(s("create")) s("fc1") s("FullyCoupled")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
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t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature")) m(s("remove")) s("fcDef")
t(s("/sol/sol1")) m(s("attach")) s("std1")
t(s("/sol/sol1")) m(s("runAll"))
t(s("/result/feature/pg2")) m(s("run"))
t(s("/result/feature/pg2")) m(s("run"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg1")) m(s("set")) s("data") s("dset1")
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg2")) m(s("run"))
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("10^-pHo [M]") i(1) i(0)
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("(Kw/(10^-pHo)) [M]") i(2) i(0)
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("55.5 [M]") i(0) i(0)
t(s("/sol/sol1")) m(s("study")) s("std1")
t(s("/study/std1/feature/time")) m(s("set")) s("notlistsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("notsolnum") s("1")
t(s("/study/std1/feature/time")) m(s("set")) s("listsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("solnum") s("1")
t(s("/sol/sol1/feature")) m(s("remove")) s("t1")
t(s("/sol/sol1/feature")) m(s("remove")) s("v1")
t(s("/sol/sol1/feature")) m(s("remove")) s("st1")
t(s("/sol/sol1")) m(s("create")) s("st1") s("StudyStep")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("study") s("std1")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("studystep") s("time")
t(s("/sol/sol1")) m(s("create")) s("v1") s("Variables")
t(s("/sol/sol1/feature/v1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1")) m(s("create")) s("t1") s("Time")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tlist") s("range(0, 0.01, ((2*dark_t)+light_t))")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plot") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotgroup") s("pg1")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotfreq") s("tout")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probesel") s("all")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probes") sa()
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probefreq") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tout") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("rtol") d(1.0E-5)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobal") d(1.0E-6)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalfactor") d(0.1)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalvaluemethod") s("manual")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("consistent") s("off")
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t(s("/sol/sol1/feature/t1")) m(s("create")) s("fc1") s("FullyCoupled")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("linsolver") s("dDef")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature")) m(s("remove")) s("fcDef")
t(s("/sol/sol1")) m(s("attach")) s("std1")
t(s("/sol/sol1")) m(s("runAll"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg2")) m(s("run"))
t(s("/result/feature/pg2")) m(s("run"))
t(s("/param")) m(s("set")) s("tauPAH_") s("15 [ns]")
t(s("/param")) m(s("set")) s("tauPAH_") s("5 [ns]")
t(s("/param")) m(s("set")) s("tauPA_") s("5 [ns]")
t(s("/sol/sol1")) m(s("study")) s("std1")
t(s("/study/std1/feature/time")) m(s("set")) s("notlistsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("notsolnum") s("1")
t(s("/study/std1/feature/time")) m(s("set")) s("listsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("solnum") s("1")
t(s("/sol/sol1/feature")) m(s("remove")) s("t1")
t(s("/sol/sol1/feature")) m(s("remove")) s("v1")
t(s("/sol/sol1/feature")) m(s("remove")) s("st1")
t(s("/sol/sol1")) m(s("create")) s("st1") s("StudyStep")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("study") s("std1")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("studystep") s("time")
t(s("/sol/sol1")) m(s("create")) s("v1") s("Variables")
t(s("/sol/sol1/feature/v1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1")) m(s("create")) s("t1") s("Time")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tlist") s("range(0, 0.01, ((2*dark_t)+light_t))")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plot") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotgroup") s("pg1")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotfreq") s("tout")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probesel") s("all")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probes") sa()
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probefreq") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tout") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("rtol") d(1.0E-5)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobal") d(1.0E-6)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalfactor") d(0.1)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalvaluemethod") s("manual")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("consistent") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1/feature/t1")) m(s("create")) s("fc1") s("FullyCoupled")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("linsolver") s("dDef")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature")) m(s("remove")) s("fcDef")
t(s("/sol/sol1")) m(s("attach")) s("std1")
t(s("/sol/sol1")) m(s("runAll"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg2")) m(s("run"))
t(s("/result/feature/pg2")) m(s("run"))
t(s("/result/feature")) m(s("duplicate")) s("pg3") s("pg2")
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg3")) m(s("label")) s("qECP Splitting")
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg3/feature/glob1")) m(s("remove")) s("unit") i(1)
t(s("/result/feature/pg3/feature/glob1")) m(s("remove")) s("descr") i(1)
t(s("/result/feature/pg3/feature/glob1")) m(s("remove")) s("expr") i(1)
t(s("/result/feature/pg3/feature/glob1")) m(s("remove")) s("unit") i(0)
t(s("/result/feature/pg3/feature/glob1")) m(s("remove")) s("descr") i(0)
t(s("/result/feature/pg3/feature/glob1")) m(s("remove")) s("expr") i(0)
t(s("/result/feature/pg3/feature/glob1")) m(s("setIndex")) s("expr") s("59.2 * (pKw-(-log10(comp1.re.c_H3O/1000)-log10(comp1.re.c_OH/1000)))") i(0)
t(s("/result/feature/pg3/feature/glob1")) m(s("set")) s("data") s("dset1")
t(s("/result/feature/pg3/feature/glob1")) m(s("setIndex")) s("expr") s("59.2 * (-log(Kw)-(-log10(comp1.re.c_H3O/1000)-log10(comp1.re.c_OH/1000)))") i(0)
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg3/feature/glob1")) m(s("setIndex")) s("expr") s("59.2 * (-log10(Kw)-(-log10(comp1.re.c_H3O/1000)-log10(comp1.re.c_OH/1000)))") i(0)
t(s("/result/feature/pg3")) m(s("run"))
t(s("/param")) m(s("descr")) s("Volume") s("check")
t(s("/param")) m(s("descr")) s("k3") s("check")
t(s("/param")) m(s("descr")) s("k4") s("check")
t(s("/param")) m(s("descr")) s("k5") s("check")
t(s("/param")) m(s("descr")) s("k6") s("check")
t(s("/param")) m(s("descr")) s("k7") s("check")
t(s("/result/feature/pg2")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg3/feature/glob1")) m(s("setIndex")) s("expr") s("(-log10(Kw)-(-log10(comp1.re.c_H3O/1000)-log10(comp1.re.c_OH/1000)))") i(0)
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg3/feature/glob1")) m(s("setIndex")) s("expr") s("log10(comp1.re.c_H3O/1000) +log10(comp1.re.c_OH/1000)") i(0)
t(s("/result/feature/pg3")) m(s("run"))
t(s("/param")) m(s("set")) s("TC_photoacid") s("10 [M]")
t(s("/sol/sol1")) m(s("study")) s("std1")
t(s("/study/std1/feature/time")) m(s("set")) s("notlistsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("notsolnum") s("1")
t(s("/study/std1/feature/time")) m(s("set")) s("listsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("solnum") s("1")
t(s("/sol/sol1/feature")) m(s("remove")) s("t1")
t(s("/sol/sol1/feature")) m(s("remove")) s("v1")
t(s("/sol/sol1/feature")) m(s("remove")) s("st1")
t(s("/sol/sol1")) m(s("create")) s("st1") s("StudyStep")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("study") s("std1")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("studystep") s("time")
t(s("/sol/sol1")) m(s("create")) s("v1") s("Variables")
t(s("/sol/sol1/feature/v1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1")) m(s("create")) s("t1") s("Time")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tlist") s("range(0, 0.01, ((2*dark_t)+light_t))")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plot") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotgroup") s("pg1")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotfreq") s("tout")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probesel") s("all")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probes") sa()
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probefreq") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tout") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("rtol") d(1.0E-5)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobal") d(1.0E-6)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalfactor") d(0.1)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalvaluemethod") s("manual")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("consistent") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1/feature/t1")) m(s("create")) s("fc1") s("FullyCoupled")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("linsolver") s("dDef")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature")) m(s("remove")) s("fcDef")
t(s("/sol/sol1")) m(s("attach")) s("std1")
t(s("/sol/sol1")) m(s("runAll"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/sol/sol1")) m(s("updateSolution"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/param")) m(s("set")) s("TC_photoacid") s("1 [M]")
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg2")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg2")) m(s("run"))
t(s("/param")) m(s("set")) s("TC_photoacid") s("1 * 10^-5 [M]")
t(s("/sol/sol1")) m(s("study")) s("std1")
t(s("/study/std1/feature/time")) m(s("set")) s("notlistsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("notsolnum") s("1")
t(s("/study/std1/feature/time")) m(s("set")) s("listsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("solnum") s("1")
t(s("/sol/sol1/feature")) m(s("remove")) s("t1")
t(s("/sol/sol1/feature")) m(s("remove")) s("v1")
t(s("/sol/sol1/feature")) m(s("remove")) s("st1")
t(s("/sol/sol1")) m(s("create")) s("st1") s("StudyStep")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("study") s("std1")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("studystep") s("time")
t(s("/sol/sol1")) m(s("create")) s("v1") s("Variables")
t(s("/sol/sol1/feature/v1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1")) m(s("create")) s("t1") s("Time")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tlist") s("range(0, 0.01, ((2*dark_t)+light_t))")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plot") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotgroup") s("pg1")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotfreq") s("tout")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probesel") s("all")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probes") sa()
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probefreq") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tout") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("rtol") d(1.0E-5)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobal") d(1.0E-6)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalfactor") d(0.1)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalvaluemethod") s("manual")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("consistent") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1/feature/t1")) m(s("create")) s("fc1") s("FullyCoupled")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("linsolver") s("dDef")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature")) m(s("remove")) s("fcDef")
t(s("/sol/sol1")) m(s("attach")) s("std1")
t(s("/sol/sol1")) m(s("runAll"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg2")) m(s("run"))
t(s("/param")) m(s("set")) s("TC_photoacid") s("1 [M]")
t(s("/sol/sol1")) m(s("study")) s("std1")
t(s("/study/std1/feature/time")) m(s("set")) s("notlistsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("notsolnum") s("1")
t(s("/study/std1/feature/time")) m(s("set")) s("listsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("solnum") s("1")
t(s("/sol/sol1/feature")) m(s("remove")) s("t1")
t(s("/sol/sol1/feature")) m(s("remove")) s("v1")
t(s("/sol/sol1/feature")) m(s("remove")) s("st1")
t(s("/sol/sol1")) m(s("create")) s("st1") s("StudyStep")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("study") s("std1")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("studystep") s("time")
t(s("/sol/sol1")) m(s("create")) s("v1") s("Variables")
t(s("/sol/sol1/feature/v1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1")) m(s("create")) s("t1") s("Time")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tlist") s("range(0, 0.01, ((2*dark_t)+light_t))")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plot") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotgroup") s("pg1")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotfreq") s("tout")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probesel") s("all")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probes") sa()
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probefreq") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tout") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("rtol") d(1.0E-5)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobal") d(1.0E-6)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalfactor") d(0.1)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalvaluemethod") s("manual")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("consistent") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1/feature/t1")) m(s("create")) s("fc1") s("FullyCoupled")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("linsolver") s("dDef")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature")) m(s("remove")) s("fcDef")
t(s("/sol/sol1")) m(s("attach")) s("std1")
t(s("/sol/sol1")) m(s("runAll"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg2")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/component/comp1/expr/var1")) m(s("set")) s("k8") s("min(10^9, 10^9*Keq_PAH_PA) [m^3/(s*mol)]")
t(s("/sol/sol1")) m(s("study")) s("std1")
t(s("/study/std1/feature/time")) m(s("set")) s("notlistsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("notsolnum") s("1")
t(s("/study/std1/feature/time")) m(s("set")) s("listsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("solnum") s("1")
t(s("/sol/sol1/feature")) m(s("remove")) s("t1")
t(s("/sol/sol1/feature")) m(s("remove")) s("v1")
t(s("/sol/sol1/feature")) m(s("remove")) s("st1")
t(s("/sol/sol1")) m(s("create")) s("st1") s("StudyStep")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("study") s("std1")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("studystep") s("time")
t(s("/sol/sol1")) m(s("create")) s("v1") s("Variables")
t(s("/sol/sol1/feature/v1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1")) m(s("create")) s("t1") s("Time")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tlist") s("range(0, 0.01, ((2*dark_t)+light_t))")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plot") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotgroup") s("pg1")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotfreq") s("tout")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probesel") s("all")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probes") sa()
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probefreq") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tout") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("rtol") d(1.0E-5)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobal") d(1.0E-6)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalfactor") d(0.1)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalvaluemethod") s("manual")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("consistent") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1/feature/t1")) m(s("create")) s("fc1") s("FullyCoupled")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("linsolver") s("dDef")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature")) m(s("remove")) s("fcDef")
t(s("/sol/sol1")) m(s("attach")) s("std1")
t(s("/sol/sol1")) m(s("runAll"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg2")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/component/comp1/expr/var1")) m(s("set")) s("k8") s("min(10^9, 10^9*Keq_PAH_PA) [1/(M*s)]")
t(s("/sol/sol1")) m(s("study")) s("std1")
t(s("/study/std1/feature/time ")) m(s("set")) s("notlistsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("notsolnum") s("1")
t(s("/study/std1/feature/time")) m(s("set")) s("listsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("solnum") s("1")
t(s("/sol/sol1/feature")) m(s("remove")) s("t1")
t(s("/sol/sol1/feature")) m(s("remove")) s("v1")
t(s("/sol/sol1/feature")) m(s("remove")) s("st1")
t(s("/sol/sol1")) m(s("create")) s("st1") s("StudyStep")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("study") s("std1")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("studystep") s("time")
t(s("/sol/sol1")) m(s("create")) s("v1") s("Variables")
t(s("/sol/sol1/feature/v1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1")) m(s("create")) s("t1") s("Time")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tlist") s("range(0, 0.01, ((2*dark_t)+light_t))")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plot") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotgroup") s("pg1")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotfreq") s("tout")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probesel") s("all")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probes") sa()
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probefreq") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tout") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("rtol") d(1.0E-5)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobal") d(1.0E-6)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalfactor") d(0.1)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalvaluemethod") s("manual")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("consistent") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1/feature/t1")) m(s("create")) s("fc1") s("FullyCoupled")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("linsolver") s("dDef")
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t(s("/sol/sol1")) m(s("attach")) s("std1")
t(s("/sol/sol1")) m(s("runAll"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg2")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/param")) m(s("set")) s("test") s("photon_flux/(Faraday_constant * length)*PA_fraction*Absorptance * Light_Pulse(t) [1/M]")
t(s("/param")) m(s("set")) s("test") s("photon_flux/(Faraday_constant * length)*PA_fraction*Absorptance [1/M]")
t(s("/param")) m(s("set")) s("test") s("photon_flux/(Faraday_constant * length)*1*Absorptance [1/M]")
t(s("/component/comp1/physics/re/feature/rch1")) m(s("set")) s("setKeq0") b(true)
t(s("/component/comp1/physics/re/feature/rch1")) m(s("set")) s("setKeq0") b(false)
t(s("/param")) m(s("set")) s("photon_flux") s("0.0464 [mA/cm^2]")
t(s("/sol/sol1")) m(s("study")) s("std1")
t(s("/study/std1/feature/time")) m(s("set")) s("notlistsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("notsolnum") s("1")
t(s("/study/std1/feature/time")) m(s("set")) s("listsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("solnum") s("1")
t(s("/sol/sol1/feature")) m(s("remove")) s("t1")
t(s("/sol/sol1/feature")) m(s("remove")) s("v1")
t(s("/sol/sol1/feature")) m(s("remove")) s("st1")
t(s("/sol/sol1")) m(s("create")) s("st1") s("StudyStep")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("study") s("std1")
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t(s("/sol/sol1")) m(s("create")) s("v1") s("Variables")
t(s("/sol/sol1/feature/v1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1")) m(s("create")) s("t1") s("Time")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tlist") s("range(0, 0.01, ((2*dark_t)+light_t))")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plot") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotgroup") s("pg1")
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t(s("/sol/sol1/feature/t1")) m(s("set")) s("probes") sa()
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probefreq") s("tsteps")
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t(s("/sol/sol1/feature/t1")) m(s("set")) s("rtol") d(1.0E-5)
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t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobal") d(1.0E-6)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalfactor") d(0.1)
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t(s("/sol/sol1/feature/t1")) m(s("create")) s("fc1") s("FullyCoupled")
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t(s("/sol/sol1")) m(s("attach")) s("std1")
t(s("/sol/sol1")) m(s("runAll"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/param")) m(s("set")) s("photon_flux") s("46.4 [mA/cm^2]")
t(s("/sol/sol1")) m(s("study")) s("std1")
t(s("/study/std1/feature/time")) m(s("set")) s("notlistsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("notsolnum") s("1")
t(s("/study/std1/feature/time")) m(s("set")) s("listsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("solnum") s("1")
t(s("/sol/sol1/feature")) m(s("remove")) s("t1")
t(s("/sol/sol1/feature")) m(s("remove")) s("v1")
t(s("/sol/sol1/feature")) m(s("remove")) s("st1")
t(s("/sol/sol1")) m(s("create")) s("st1") s("StudyStep")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("study") s("std1")
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t(s("/sol/sol1")) m(s("create")) s("v1") s("Variables")
t(s("/sol/sol1/feature/v1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1")) m(s("create")) s("t1") s("Time")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tlist") s("range(0, 0.01, ((2*dark_t)+light_t))")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plot") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotgroup") s("pg1")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotfreq") s("tout")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probesel") s("all")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probes") sa()
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probefreq") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tout") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("rtol") d(1.0E-5)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobal") d(1.0E-6)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalfactor") d(0.1)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalvaluemethod") s("manual")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("consistent") s("off")
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t(s("/sol/sol1/feature/t1")) m(s("create")) s("fc1") s("FullyCoupled")
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t(s("/sol/sol1/feature/t1/feature")) m(s("remove")) s("fcDef")
t(s("/sol/sol1")) m(s("attach")) s("std1")
t(s("/sol/sol1")) m(s("runAll"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg1")) m(s("set")) s("legendpos") s("center")
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg1")) m(s("set")) s("legendpos") s("lowermiddle")
t(s("/result/feature/pg1")) m(s("set")) s("legendpos") s("lowerleft")
t(s("/result/feature/pg1")) m(s("set")) s("legendpos") s("center")
t(s("/sol/sol1")) m(s("study")) s("std1")
t(s("/study/std1/feature/time")) m(s("set")) s("notlistsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("notsolnum") s("1")
t(s("/study/std1/feature/time")) m(s("set")) s("listsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("solnum") s("1")
t(s("/sol/sol1/feature")) m(s("remove")) s("t1")
t(s("/sol/sol1/feature")) m(s("remove")) s("v1")
t(s("/sol/sol1/feature")) m(s("remove")) s("st1")
t(s("/sol/sol1")) m(s("create")) s("st1") s("StudyStep")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("study") s("std1")
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t(s("/sol/sol1")) m(s("create")) s("v1") s("Variables")
t(s("/sol/sol1/feature/v1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1")) m(s("create")) s("t1") s("Time")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tlist") s("range(0, 0.01, ((2*dark_t)+light_t))")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plot") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotgroup") s("pg1")
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t(s("/sol/sol1/feature/t1")) m(s("set")) s("probes") sa()
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probefreq") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tout") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("rtol") d(1.0E-5)
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t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobal") d(1.0E-6)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalfactor") d(0.1)
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t(s("/sol/sol1/feature/t1")) m(s("create")) s("fc1") s("FullyCoupled")
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t(s("/sol/sol1")) m(s("attach")) s("std1")
t(s("/sol/sol1")) m(s("runAll"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg2")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg3/feature/glob1")) m(s("set")) s("data") s("parent")
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t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
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t(s("/result/feature/pg3")) m(s("run"))
t(s("/param")) m(s("set")) s("test") s("photon_flux/(Faraday_constant * length)*1*Absorptance")
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t(s("/param")) m(s("remove")) s("test21")
t(s("/param")) m(s("set")) s("test") s("photon_flux/(F_const * length)*1*Absorptance")
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t(s("/study/std1/feature/time")) m(s("set")) s("solnum") s("1")
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t(s("/sol/sol1/feature/v1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1")) m(s("create")) s("t1") s("Time")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tlist") s("range(0, 0.01, ((2*dark_t)+light_t))")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plot") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotgroup") s("pg1")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotfreq") s("tout")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probesel") s("all")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probes") sa()
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probefreq") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tout") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("rtol") d(1.0E-5)
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t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobal") d(1.0E-6)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalfactor") d(0.1)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalvaluemethod") s("manual")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("consistent") s("off")
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t(s("/sol/sol1/feature/t1")) m(s("create")) s("fc1") s("FullyCoupled")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
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t(s("/sol/sol1")) m(s("attach")) s("std1")
t(s("/sol/sol1")) m(s("runAll"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg2")) m(s("run"))
t(s("/result/feature/pg2")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/param")) m(s("remove")) s("Faraday_constant")
t(s("/sol/sol1")) m(s("study")) s("std1")
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t(s("/study/std1/feature/time")) m(s("set")) s("notsolnum") s("1")
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t(s("/study/std1/feature/time")) m(s("set")) s("solnum") s("1")
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t(s("/sol/sol1/feature")) m(s("remove")) s("v1")
t(s("/sol/sol1/feature")) m(s("remove")) s("st1")
t(s("/sol/sol1")) m(s("create")) s("st1") s("StudyStep")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("study") s("std1")
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t(s("/sol/sol1")) m(s("create")) s("v1") s("Variables")
t(s("/sol/sol1/feature/v1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1")) m(s("create")) s("t1") s("Time")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tlist") s("range(0, 0.01, ((2*dark_t)+light_t))")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plot") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotgroup") s("pg1")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotfreq") s("tout")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probesel") s("all")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probes") sa()
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probefreq") s("tsteps")
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t(s("/sol/sol1/feature/t1")) m(s("set")) s("rtol") d(1.0E-5)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobal") d(1.0E-6)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalfactor") d(0.1)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalvaluemethod") s("manual")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("consistent") s("off")
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t(s("/sol/sol1/feature/t1")) m(s("create")) s("fc1") s("FullyCoupled")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("linsolver") s("dDef")
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t(s("/sol/sol1/feature/t1/feature")) m(s("remove")) s("fcDef")
t(s("/sol/sol1")) m(s("attach")) s("std1")
t(s("/sol/sol1")) m(s("runAll"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("(10^-pHo) [M]") i(1) i(0)
t(s("/component/comp1/physics/re/feature/inits1")) m(s("setIndex")) s("initialValue") s("(55.5) [M]") i(0) i(0)
t(s("/sol/sol1")) m(s("study")) s("std1")
t(s("/study/std1/feature/time")) m(s("set")) s("notlistsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("notsolnum") s("1")
t(s("/study/std1/feature/time")) m(s("set")) s("listsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("solnum") s("1")
t(s("/sol/sol1/feature")) m(s("remove")) s("t1")
t(s("/sol/sol1/feature")) m(s("remove")) s("v1")
t(s("/sol/sol1/feature")) m(s("remove")) s("st1")
t(s("/sol/sol1")) m(s("create")) s("st1") s("StudyStep")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("study") s("std1")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("studystep") s("time")
t(s("/sol/sol1")) m(s("create")) s("v1") s("Variables")
t(s("/sol/sol1/feature/v1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1")) m(s("create")) s("t1") s("Time")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tlist") s("range(0, 0.01, ((2*dark_t)+light_t))")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plot") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotgroup") s("pg1")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotfreq") s("tout")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probesel") s("all")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probes") sa()
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probefreq") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tout") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("rtol") d(1.0E-5)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobal") d(1.0E-6)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalfactor") d(0.1)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalvaluemethod") s("manual")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("consistent") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1/feature/t1")) m(s("create")) s("fc1") s("FullyCoupled")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("linsolver") s("dDef")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature")) m(s("remove")) s("fcDef")
t(s("/sol/sol1")) m(s("attach")) s("std1")
t(s("/sol/sol1")) m(s("runAll"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/result/feature/pg2")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/param")) m(s("set")) s("TC_photoacid") s("33.333 [M]")
t(s("/sol/sol1")) m(s("study")) s("std1")
t(s("/study/std1/feature/time")) m(s("set")) s("notlistsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("notsolnum") s("1")
t(s("/study/std1/feature/time")) m(s("set")) s("listsolnum") i(1)
t(s("/study/std1/feature/time")) m(s("set")) s("solnum") s("1")
t(s("/sol/sol1/feature")) m(s("remove")) s("t1")
t(s("/sol/sol1/feature")) m(s("remove")) s("v1")
t(s("/sol/sol1/feature")) m(s("remove")) s("st1")
t(s("/sol/sol1")) m(s("create")) s("st1") s("StudyStep")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("study") s("std1")
t(s("/sol/sol1/feature/st1")) m(s("set")) s("studystep") s("time")
t(s("/sol/sol1")) m(s("create")) s("v1") s("Variables")
t(s("/sol/sol1/feature/v1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1")) m(s("create")) s("t1") s("Time")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tlist") s("range(0, 0.01, ((2*dark_t)+light_t))")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plot") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotgroup") s("pg1")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("plotfreq") s("tout")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probesel") s("all")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probes") sa()
t(s("/sol/sol1/feature/t1")) m(s("set")) s("probefreq") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("tout") s("tsteps")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("rtol") d(1.0E-5)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobal") d(1.0E-6)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalmethod") s("scaled")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalfactor") d(0.1)
t(s("/sol/sol1/feature/t1")) m(s("set")) s("atolglobalvaluemethod") s("manual")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("consistent") s("off")
t(s("/sol/sol1/feature/t1")) m(s("set")) s("control") s("time")
t(s("/sol/sol1/feature/t1")) m(s("create")) s("fc1") s("FullyCoupled")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("linsolver") s("dDef")
t(s("/sol/sol1/feature/t1/feature/fc1")) m(s("set")) s("dtech") s("auto")
t(s("/sol/sol1/feature/t1/feature")) m(s("remove")) s("fcDef")
t(s("/sol/sol1")) m(s("attach")) s("std1")
t(s("/sol/sol1")) m(s("runAll"))
t(s("/result/feature/pg1")) m(s("run"))
t(s("/result/feature/pg3")) m(s("run"))
t(s("/param")) m(s("set")) s("TC_photoacid") s("0.033333 [M]")